FAIR Data Services
FAIR Data
FAIR Data Principles
FAIR Data Services Overview
FAIR Permission Model
Using FAIR Data Services
Customising the Layout
Navigating in FAIR
Registering for a FAIR Account
Viewing Release Information
Discovering Data
Discovering Data in FAIR
Searching for Data
The Dataset Tab
Dataset Subscriptions
Cohort Builder
Introduction to Cohort Builder
Cohort Builder Overview
Administering Cohort Builder
Building a Cohort
Accessing Data
Data Access Requests
Submitting a Data Access Request
Viewing a Data Access Request
Reviewing a Data Access Request
Duplicating data access requests
Data Access Request ID
Data transfers
Transferring data to a workspace
Data Transfer Receipt
Managing Datasets
Creating and deleting datasets
Creating a new Dataset
Deleting a Dataset
Dataset Administration
Dataset Administration Tab
Dataset Visibility
Available data delivery formats
Applying dataset restrictions
Managing dataset metadata
Duplicating Dataset Metadata
Editing a Dataset
Deleting a Dictionary
Managing dataset data
Data held in FAIR
Uploading Data Files
Validating and Converting Data
Validating Dictionaries
Converting Data
Data held externally
External databases
Federated Datasets
Dataset Collections
Dataset Metrics
Administering FAIR
FAIR Roles
Role-based Access Control in FAIR
Role Management
FAIR Permissions
User Management
FAIR Audit
Commons Mode
FAIR Pseudonymisation Service
Pseudonymisation Service Overview
Enabling PMN
PMN Rules
User Groups
Managing User Groups
User Groups Permissions
Customising FAIR
Custom Catalogues
Custom Catalogues Overview
Custom Catalogue APIs
Custom Catalogue Example Template and Field Types
Creating a new Catalogue Template
Updating a Dataset to use a new Catalogue Template
Setting a new Default Catalogue Template
Customising Search
Customising the FAIR Landing Page
Custom Landing Page Actions
Custom Landing Page Banner
Custom Landing Page Content
Theme Management
Vocabularies Tab
FAIR Vocabularies
Custom Links
Dataset Custom Links
Knowledge Base Link
Search Links
Custom DAR email templates
Custom DAR Forms
FAIR API
The FAIR API
FAIR Release Notes
Workspaces
Workspace Basics
Workspace principles
About your Workspace
Navigating your Workspace
Browser Support for Workspaces
Shared Compute Resources in Workspaces
User Roles
Role-based Access Control in Workspaces
The Standard User Role
The Workspace Administrator Role
The Contributor Role
The Tenant Administrator Role
The Manager Role
The Custom Role
Logging into Workspaces
Registering for a Workspaces Account
Logging in and out of Workspaces
Resetting your Workspaces Password
Using Two-Factor Authentication to Access Workspaces
Time-based one-time password support
Default workspace configuration
Data & Files
Exporting data
Submitting an Airlock download request
Responding to an Airlock download request
Downloading or copying approved files
Uploading data
Guidance for uploading files
Inbound Airlock and Inbox
Uploading files via an API
Uploading files via the Workspace
Uploading files as a public user
Data Tables
Navigating the Database tab
Creating database tables
Adding metadata to data tables
Saving a data table in CSV format
Using the Data Table Editor
Creating a custom view
Sample mode in the Data Table Editor
Files
Understanding the Workspace file storage
Navigating the Files tab
Creating and deleting folders
Creating and deleting files
Moving and copying files
Extracting your compressed files
Using Blob storage
Using the SQL Editor
Using Office documents in a Workspace
Analysing Data
Data Table Analytics
Statistical Modelling
Linear Regression
Binomial Logistic Regression
Analysis of Variance (ANOVA)
Statistical Testing
Student's T-test
Mann-Whitney U test
Pearson's chi-squared test
Descriptive Statistics
Single mean
Compare means
Correlation
Cross tabulation
Using Data Table Analytics
Using the Data Table Analytics module
Data Visualisation
Histogram
Scatter plot
Line chart
Frequency bar chart
Column bar chart
Density plot
Box and whisker plot
Bubble chart
Area chart
Heatmap
Radar Chart
Word cloud
Timeline
Virtual Machines
Installing Software on Virtual Machines
Installing R on your Virtual Machine
Installing Anaconda and running Jupyter Notebooks on your Virtual Machine
Installing PLINK on your Virtual Machine
Installing RStudio on your Virtual Machine
Installing LibreOffice on your Virtual Machine
Using Git within a Workspace with a Linux VM
Setting up GitLab on your Virtual Machine
Installing Docker on your Virtual Machine
Installing text editors on your Virtual Machine
Installing database GUIs on your Virtual Machine
Installing MFlow R API in your Virtual Machine
Setting up SAS® on your Windows Virtual Machine
Using Virtual Machines
Accessing your Virtual Machine
Using your Virtual Machine
Virtual Machine Allow List
First-time Virtual Machine setup
Keeping your Virtual Machine up to date
Changing screen resolution of a Linux Virtual Machine
Using a Data Science Virtual Machine
Requesting a new Virtual Machine
Types of Virtual Machines
R Console
Installing R Packages
Using the R Console
Reading and Writing Data in R
Pre-installed R Packages
Installing and Using LaTex Packages
Fixing Package Dependency Issues
Apps
Navigating the Apps tab
Using Built-in Apps
Version control through Git
Using your Jupyter Notebook App
Reading and writing data in the Built-in Apps using R
Shiny Apps
About Shiny Apps
Creating a Shiny App from a template
Navigating the Shiny Apps tab
Customising an existing Shiny App
How to upload your Shiny App
Other Tools and Features
Snapshots
Capturing a Snapshot of a Workspace
Generating Reports
Generating Reports from your Research Outputs
Publishing PDFs in a Workspace VM
Collaborating in the workspace
Adding, viewing and editing notes and insights
Notifications
Viewing Service Banners
Adding a New Service Banner
Managing Secrets
Workspace Administration
Using Workspaces as a Tenant Administrator
Adding a Workspace
Editing or Deleting an existing Workspace
Hibernating a Workspace
Management of Workspaces
Adding a New User
Adding multiple users from a file
Managing Workspace Requests
Downloading an Audit Extract
Using Workspaces as an Administrator
Inviting users to your workspace and assigning roles
Using the Audit tab to monitor Workspace activity
Customising your Workspace
Accessing a workspace when you are a TA
Workspace Restrictions
Modifying the Allow List
Workspaces Release Notes
Policies
Aridhia DRE Terms and Conditions
Aridhia DRE Privacy Policy
Aridhia DRE Fair Usage Policy
Sample Data Processing Agreement
Workspace VM Patching Policy
New Workspace Terms and Conditions
Shared Responsibility Model
Aridhia DRE Terms of Use
Aridhia TRE Terms of Use
Service Descriptions
FAIR Data Services Service Description
Workspaces Service Description
TRE Service Description
Aridhia DRE R Maintenance Policy
Training & Demos
Aridhia's Shiny Apps
Training courses
Sharing Files using SendTo
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Customise FAIR with FAIR Vocabularies
Customise FAIR using FAIR Vocabularies
Adding Custom Links to FAIR
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