Uploading & Importing Data – Aridhia DRE Workspaces Knowledge Base

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FAIR Data Services

FAIR Data Principles

FAIR Data Services Overview

Using FAIR Data Services

Viewing Release Information

Customising the Layout

Navigating in FAIR

User Signup and Management

FAIR Permissions

FAIR Permission Model

Role-based Access Control

Registering for a FAIR Account

Discovering Data

Discovering Data

Saving, Sharing and Deleting a Search

Searching for Data

Dataset Visibility

Editing a Dataset

Deleting a Dataset

Creating a Dataset

What is a Dataset?

Custom DAR Forms

Data Access Requests (DAR)

Reviewing a Data Access Request

Viewing a Data Access Request

Requesting Access to Data

Administering FAIR

User Approval and Disapproval

Role Management

Configuring Service Vocabularies

Theme Management

Service Vocabulary API

Logging into Workspaces

Registering for a Workspaces account

Using two-factor authentication to access Workspaces

Logging in and out of Workspaces

Resetting your Workspaces password

Role-based access control

The Tenant Administrator Role

The Contributor role

The Workspace Administrator role

The Standard User role

Workspaces and role-based access control

Using Workspaces

Workspace principles

Browser support for Workspaces

Navigating your workspace

About your workspace

Administering Workspaces

Customising your workspace

Inviting users to your workspace and assigning roles

Using Workspaces as a Tenant Administrator

Editing or deleting an existing workspace

Adding a workspace

Uploading & importing data

Uploading files via an API

Unzipping your zipped folders

Inbound Airlock and Inbox

Adding metadata to datasets

Converting files to datasets

Guidance and best practices for uploading

Understanding the workspace folders

Aridhia De-Identification Service

Using the Data Table Editor

Exporting a data table

Navigating the Datasets tab

Creating a custom view

Creating a rapid visualisation of your data

Using Blob storage

Managing your files

Using the SQL Editor

Creating and deleting files

Creating a new folder

Navigating the Files tab

Downloading or copying approved files

Responding to an Airlock download request

Requesting an Airlock

Tools and Features

Reading and writing data in R

Installing R packages

Using the R Console

Virtual Desktops

Installing Docker on your Virtual Desktop

Setting up GitLab on your Virtual Desktop

Installing LibreOffice on your Linux Virtual Desktop

First-time Virtual Desktop setup

Virtual Desktop whitelist

Installing RStudio on your Virtual Desktop

Installing PLINK on your Virtual Desktop

Installing Anaconda and running Jupyter Notebooks on your Virtual Dekstop

Installing R on your Virtual Desktop

Using Virtual Desktops

Accessing your Virtual Desktop

Collaborating in the workspace

Adding, viewing and editing notes and insights

Exploring and communicating with your team

Working with Mini-apps

How to upload your Mini-app

Customising an existing Mini-app

Navigating the Mini-apps tab

Creating a Mini-app from a template

About Mini-apps

Point and click data exploration

Using the Data Table Analytics module

Creating custom visualisations with R

Exploring and visualising your data

Publishing to journal formats

Publishing PDFs in a Workspace VM

Security & Audit

Managing workspace access and secure data sharing

Safeguarding the sharing and export of privileged data

Protecting access to data and services using two-factor authentication

Tracking and monitoring workspace activity

Using the Audit tab to monitor workspace activity

Medical Statistics Core

Descriptive statistics and visualisation

Box/Whisker plot

Column Bar Chart

Frequency Bar Chart

Pearson's chi-squared test

Mann–Whitney U test (with visualisation)

Student's T-test (with visualisation)

Logistic Regression

Linear Regression

Analysis of variance (ANOVA)

Training & Demos

Aridhia's Shiny Apps

Training courses

Workspaces Release Notes

FAIR Data Services

Aridhia Data Selection

Aridhia Dataset Library

Aridhia De-Identification Service

Sample Data Processing Agreement

Aridhia DRE fair usage policy

Aridhia DRE privacy policy

Aridhia DRE terms and conditions

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Uploading files via the Workspace

Learn how to use the upload wizard to securely upload files

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